Package: toxEval 1.4.0

toxEval: Exploring Biological Relevance of Environmental Chemistry Observations

Data analysis package for estimating potential biological effects from chemical concentrations in environmental samples. Included are a set of functions to analyze, visualize, and organize measured concentration data as it relates to user-selected chemical-biological interaction benchmark data such as water quality criteria. The intent of these analyses is to develop a better understanding of the potential biological relevance of environmental chemistry data. Results can be used to prioritize which chemicals at which sites may be of greatest concern. These methods are meant to be used as a screening technique to predict potential for biological influence from chemicals that ultimately need to be validated with direct biological assays. A description of the analysis can be found in Blackwell (2017) <doi:10.1021/acs.est.7b01613>.

Authors:Laura DeCicco [aut, cre], Steven Corsi [aut], Daniel Villeneuve [aut], Brett Blackwell [aut], Gerald Ankley [aut], Alison Appling [rev], Dalma Martinovic [rev]

toxEval_1.4.0.tar.gz
toxEval_1.4.0.zip(r-4.5)toxEval_1.4.0.zip(r-4.4)toxEval_1.4.0.zip(r-4.3)
toxEval_1.4.0.tgz(r-4.5-any)toxEval_1.4.0.tgz(r-4.4-any)toxEval_1.4.0.tgz(r-4.3-any)
toxEval_1.4.0.tar.gz(r-4.5-noble)toxEval_1.4.0.tar.gz(r-4.4-noble)
toxEval_1.4.0.tgz(r-4.4-emscripten)toxEval_1.4.0.tgz(r-4.3-emscripten)
toxEval.pdf |toxEval.html
toxEval/json (API)
NEWS

# Install 'toxEval' in R:
install.packages('toxEval', repos = c('https://ldecicco-usgs.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/doi-usgs/toxeval/issues

On CRAN:

Conda:

4.54 score 58 scripts 256 downloads 1 mentions 33 exports 85 dependencies

Last updated 4 months agofrom:93ead3f054. Checks:9 OK. Indexed: no.

TargetResultLatest binary
Doc / VignettesOKMar 22 2025
R-4.5-winOKMar 22 2025
R-4.5-macOKMar 22 2025
R-4.5-linuxOKMar 23 2025
R-4.4-winOKMar 22 2025
R-4.4-macOKMar 22 2025
R-4.4-linuxOKMar 22 2025
R-4.3-winOKMar 22 2025
R-4.3-macOKMar 22 2025

Exports:as.toxEvalclean_endPoint_infocreate_toxEvalcreateLinkend_point_infoendpoint_hitsendpoint_hits_DTexplore_endpointsfilter_groupsflagsget_ACCget_chemical_summaryget_concentration_summarygraph_chem_datahits_by_groupingshits_by_groupings_DThits_summaryhits_summary_DTmake_tox_mapmap_tox_dataplot_chemical_boxplotsplot_tox_boxplotsplot_tox_endpointsplot_tox_endpoints2plot_tox_heatmapplot_tox_stacksrank_sitesrank_sites_DTremove_flagsside_by_side_datatox_boxplot_datatox_chemicalsToxCast_ACC

Dependencies:base64encbslibcachemcellrangerclicolorspacecommonmarkcpp11crayoncrosstalkdigestdplyrDTevaluatefansifarverfastmapfontawesomefsgenericsggplot2gluegtablehighrhmshtmltoolshtmlwidgetshttpuvisobandjquerylibjsonliteknitrlabelinglaterlatticelazyevalleafletleaflet.providerslifecyclemagrittrMASSMatrixmemoisemgcvmimemunsellnlmepillarpkgconfigpngprettyunitsprogresspromisespurrrR6rappdirsrasterRColorBrewerRcppreadxlrematchrlangrmarkdownsassscalesshinyshinyAceshinycssloadersshinydashboardsourcetoolsspstringistringrterratibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunxtableyaml

Chemical Names

Rendered fromChemical_names.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2024-10-02
Started: 2024-01-29

Introduction to toxEval

Rendered fromIntroduction.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2024-10-02
Started: 2018-04-03

Preparing toxEval Data

Rendered fromPrepareData.Rmdusingknitr::rmarkdownon Mar 22 2025.

Last update: 2024-11-22
Started: 2018-04-03