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Package: smwrQW 0.7.14

Dave Lorenz

smwrQW: Tools for censored data analysis

This package provides tools for the analysis and graphing of censored data, focussing on water-quality data. It provides a uniform user interface to many different methods for the analysis.

Authors:Dave Lorenz [cre], Laura De Cicco [aut], Alison Appling [ctb], Joseph Stachelek [ctb]

smwrQW_0.7.14.tar.gz
smwrQW_0.7.14.zip(r-4.7)smwrQW_0.7.14.zip(r-4.6)smwrQW_0.7.14.zip(r-4.5)
smwrQW_0.7.14.tgz(r-4.6-x86_64)smwrQW_0.7.14.tgz(r-4.6-arm64)smwrQW_0.7.14.tgz(r-4.5-x86_64)smwrQW_0.7.14.tgz(r-4.5-arm64)
smwrQW_0.7.14.tar.gz(r-4.7-arm64)smwrQW_0.7.14.tar.gz(r-4.7-x86_64)smwrQW_0.7.14.tar.gz(r-4.6-arm64)smwrQW_0.7.14.tar.gz(r-4.6-x86_64)
smwrQW_0.7.14.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
smwrQW/json (API)

# Install 'smwrQW' in R:

install.packages('smwrQW', repos = c('https://ldecicco-usgs.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/usgs-r/smwrqw/issues

Uses libs:

fortran– Runtime library for GNU Fortran applications

Datasets:

atrazine.df - Atrazine Data A dataset of atrazine samples, replicates, and blanks collected by the U.S. Geological Survey from October 1, 2001 through September 30, 2012.
atrazine.dl - Atrazine Reporting Data A dataset of the reporting and detection levels for atrazine from the U.S. Geological Survey National Water Quality Lab.
atrazine.spk - Atrazine Spike Data A dataset of atrazine environmental and spike samples collected by the U.S. Geological Survey from October 1, 2001 through September 30, 2012.
pcodeColData - Selected USGS parameter Codes

On CRAN:

fortran

6.69 score 11 stars 1 packages 89 scripts 67 exports 125 dependencies

Last updated from:7f9d3f24c9. Checks:3 ERROR, 9 WARNING, 1 OK. Indexed: no.

Target	Result	Time
linux-devel-arm64	ERROR	259
linux-devel-x86_64	ERROR	227
source / vignettes	ERROR	325
linux-release-arm64	WARNING	207
linux-release-x86_64	WARNING	227
macos-release-arm64	WARNING	125
macos-release-x86_64	WARNING	287
macos-oldrel-arm64	WARNING	120
macos-oldrel-x86_64	WARNING	400
windows-devel	WARNING	209
windows-release	WARNING	171
windows-oldrel	WARNING	226
wasm-release	OK	164

Exports:%~=%add Arith as.lcens as.mcens as.qw censCor censKSample.test censMean.CI censMove.1 censMulticomp.test censor censoring censorLevels censpp censPPCC.test censQtiles.CI censQuantile censReg censReg_AMLE.fit censReg_AMLE.pred censReg_MLE.fit censStats censSumStats code01 codeU Compare convert2qw convertFqw dlimit dotPlot fillIn gehanScores genWilcox.test importNWISqw importQW imputeLessThans kendallATS.test makeColNames Math mcenKM mcenMLE mcenROS mdlAMLE mdlKM mdlKMstats mdlMLE mdlROS mImputeLessThans multiply pairedPratt.test pcodeNWISqw pctCens pow ppw.test qw2mcens qwCoalesce qwRPD ratio rbindQW readNWQLdl sdlFill show splitQual timePlot View xyPlot

Dependencies:abind akima askpass backports bit bit64 boot broom cachem car carData class classInt cli clipr codetools coin colorspace cowplot cpp11 crayon curl data.table dataRetrieval DBI Deriv digest doBy dplyr e1071 farver fastmap forecast Formula fracdiff generics ggplot2 glue gtable hms httr2 isoband jsonlite KernSmooth labeling lattice leaps libcoin lifecycle lme4 lmtest lubridate magrittr MASS Matrix MatrixModels matrixStats memoise mgcv microbenchmark minqa modelr modeltools multcomp mvtnorm nlme nloptr nnet numDeriv openssl pbkrtest pillar pkgconfig prettyunits progress proxy purrr quantreg R6 randtests rappdirs rbibutils RColorBrewer Rcpp RcppArmadillo RcppEigen Rdpack readr reformulas rlang s2 S7 sandwich scales sf smwrBase smwrGraphs smwrStats sp SparseM stringi stringr survival sys TH.data tibble tidyr tidyselect timechange timeDate truncnorm tzdb units urca utf8 vctrs viridisLite vroom whisker withr wk XML xml2 zCompositions zoo

Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.

Comparing Paired Data

Rendered fromComparingPairedData.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Comparing Three or More Groups

Rendered fromComparingMoreGroups.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Comparing Two Groups

Rendered fromComparingTwoGroups.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Computing Summary Statistics

Rendered fromComputingSummaryStatistics.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Confidence Intervals

Rendered fromConfidenceIntervals.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-08-10

Correlation

Rendered fromCorrelation.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Multivariate Methods

Rendered fromMultivariateMethods.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2018-09-18
Started: 2015-07-09

Plotting Censored Data

Rendered fromPlottingCensoredData.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-05-20

Quality Control Data Analysis

Rendered fromQualityControl.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2017-07-28
Started: 2015-08-10

Regression

Rendered fromRegression.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-09

Working with Water-Quality Data

Rendered fromWaterQualityData.Rnwusingutils::Sweaveon May 26 2026.

Last update: 2015-12-30
Started: 2015-07-14

Help page	Topics
Tools for censored water-quality data analysis	smwrQW-package
Subset an Object	subset.qw [.lcens [.mcens [.qw
Possible Equality	%~=%
Add Water-Quality Data	add
Arithmetic Methods for 'lcens', 'mcens', and 'qw' objects	Arith,lcens,lcens-method Arith,lcens,numeric-method Arith,mcens,mcens-method Arith,mcens,numeric-method Arith,numeric,lcens-method Arith,numeric,mcens-method Arith,numeric,qw-method Arith,qw,numeric-method Arith,qw,qw-method Arith-censored
Character Representations	as.character.lcens as.character.mcens as.character.qw
Coerce to a Data Frame	as.data.frame.lcens as.data.frame.mcens as.data.frame.qw
Numeric Representations	as.double.qw
Left-censored Data Conversion	as.lcens as.lcens,character,missing,missing-method as.lcens,lcens,missing,missing-method as.lcens,numeric,missing,character-method as.lcens,numeric,missing,logical-method as.lcens,numeric,missing,missing-method as.lcens,numeric,numeric,character-method as.lcens,numeric,numeric,logical-method as.lcens,numeric,numeric,missing-method as.lcens,qw,missing,missing-method as.lcens,qw,numeric,missing-method
Multiply-censored Data Conversion	as.mcens as.mcens,character,missing,missing-method as.mcens,lcens,missing,missing-method as.mcens,mcens,missing,missing-method as.mcens,numeric,missing,character-method as.mcens,numeric,missing,integer-method as.mcens,numeric,missing,missing-method as.mcens,numeric,missing,numeric-method as.mcens,numeric,numeric,missing-method as.mcens,qw,missing,missing-method
Water-quality Data Conversion	as.qw as.qw,numeric,character,character,numeric,character,character,character,character,character,missing-method as.qw,numeric,character,character,numeric,character,character,character,character,character,numeric-method
Atrazine Data A dataset of atrazine samples, replicates, and blanks collected by the U.S. Geological Survey from October 1, 2001 through September 30, 2012.	atrazine.df
Atrazine Reporting Data A dataset of the reporting and detection levels for atrazine from the U.S. Geological Survey National Water Quality Lab.	atrazine.dl
Atrazine Spike Data A dataset of atrazine environmental and spike samples collected by the U.S. Geological Survey from October 1, 2001 through September 30, 2012.	atrazine.spk
Box Plot	boxPlot.data.frame boxPlot.lcens boxPlot.qw
Not exported	boxPlotCensStats
Combine Values into a Vector	c.lcens c.mcens c.qw
Correlation	censCor
Test for difference in left-censored samples	censKSample.test
Mean with Confidence Limits	censMean.CI
Censored Maintenance of Variance Extension, Type 1	censMove.1
Multiple Comparisons	censMulticomp.test
Multiply-censored Data Conversion	censor
Describe Censoring	censoring censoring.default censoring.lcens censoring.mcens censoring.qw
Describe Censoring	censorLevels censorLevels.default censorLevels.lcens censorLevels.mcens censorLevels.qw
Probability Plotting Positions	censpp censpp.default censpp.lcens censpp.mcens
Test for Normality	censPPCC.test
Quantiles with Confidence Limits	censQtiles.CI
Sample Quantiles	censQuantile censQuantile.default censQuantile.lcens censQuantile.mcens censQuantile.qw
Censored Data Regression	censReg
Support Functions for Censored Regression	censReg_AMLE.fit censReg_MLE.fit
Support Function for Censored Regression	censReg_AMLE.pred
Mean and Standard Deviation	censStats censStats.default censStats.lcens censStats.mcens censStats.qw
Summary Statistics	censSumStats
Code Censored Values	code01 code01.data.frame code01.default
Code Censored Values	codeU codeU.data.frame codeU.default
Extract Model Coefficients	coef.censReg
Comparison Methods for 'lcens', 'mcens', and 'qw' objects	Compare,lcens,numeric-method Compare,mcens,numeric-method Compare,numeric,lcens-method Compare,numeric,mcens-method Compare,numeric,qw-method Compare,qw,numeric-method Compare-censored
Water-Quality Data	convert2qw
Water-Quality Data	convertFqw
Impute Detection Limits	dlimit
Censored Data Methods for Function 'dotPlot'	dotPlot,mcens-method dotPlot,qw-method dotPlot-censored
Empirical Distribution Function	ecdfPlot.lcens ecdfPlot.qw
Extract AIC from a Fitted Model	extractAIC.censReg
Estimate Censored Values	fillIn fillIn.lcens fillIn.mcens fillIn.numeric
Extract Model Fitted Values	fitted.censReg
Encode in a Common Format	format.lcens format.mcens format.qw
Gehan Test Scores	gehanScores
Test for Difference in Censored Samples	genWilcox.test
Water-Quality Data	importNWISqw
Water-Quality Data	importQW
Impute Censored Values	imputeLessThans imputeLessThans.data.frame imputeLessThans.default
Missing Values	is.na.lcens is.na.mcens is.na.qw
Kendall' tau	kendallATS.test
Left-censored Data	lcens-class
Length of an Object	length.lcens length.mcens length.qw
Extract Log-Likelihood	logLik.censReg
Column Names	makeColNames
Mathematical Transform Methods for 'lcens' objects	Math,lcens-method Math,mcens-method Math,qw-method Math-censored
Estimate Statistics	mcenKM
Estimate Statistics	mcenMLE
Estimate Statistics	mcenROS
Mutliply-censored Data	mcens-class
Estimate Statistics	mdlAMLE
Estimate Statistics	mdlKM
Estimate Statistics	mdlKMstats
Estimate Statistics	mdlMLE
Estimate Statistics	mdlROS
Arithmetic Mean	mean.lcens mean.mcens
Arithmetic Mean	mean.qw
Median Value	median.lcens median.mcens median.qw
Impute Censored Values	mImputeLessThans mImputeLessThans.data.frame mImputeLessThans.default
Multiply Water-Quality Data by a Number	multiply
Extract the Number of Observations from a Fit	nobs.censReg
Test for difference in left-censored samples	pairedPratt.test
Selected USGS parameter Codes	pcodeColData
Parameter Code Information	pcodeNWISqw
Percent Censored	pctCens
Empirical Cumulative Percent	percentile.lcens percentile.qw
Diagnostic Plot	plot.censReg
Plot	plot.genWilcox plot.ppw
Plot Water-Quality Data	plot.qw
Diagnostic Plot	plot.summary.censReg
Power Transforms	pow
Test for difference in left-censored samples	ppw.test
Predict Values	predict.censReg
Print Results	print.censMCT
Print Results	print.censQuantile
Print Results	print.censReg
Print Results	print.censStats
Print Values	print.lcens print.mcens print.qw
Print Results	print.summary.censReg
Probability Plot	probPlot.lcens probPlot.qw
Q-Q Plot	qqPlot.lcens qqPlot.qw
Sample Quantiles	quantile.lcens quantile.mcens quantile.qw
Water-quality Data	qw-class
Conversion to class "mcens"	qw2mcens
Replace missing values	qwCoalesce
Relative Differences	qwRPD
Compute Ratios	ratio
Combine Data by Rows	rbindQW
Historical Reporting Limits	readNWQLdl
Extract Model Residuals	residuals.censReg
Root-Mean-Squared Error	rmse.censReg
Estimate Statistics	sdlFill
Show Methods for 'WSqw' objects	show,lcens-method show,mcens-method show,qw-method show-censored
Sorting Vectors	sort.lcens sort.mcens
Split Leading Qualifiers	splitQual
Display Structure	str.lcens str.mcens str.qw
Summarizing Linear Model Fits	summary.censReg
Summarize Data	summary.lcens summary.mcens summary.qw
Censored Data Methods for Function 'timePlot'	timePlot,Date,lcens-method timePlot,Date,qw-method timePlot-censored
Variance-Covariance Matrix	vcov.censReg
Invoke a Data Viewer	View
Variance Inflation Factors	vif.censReg
Censored Data Methods for Function 'xyPlot'	xyPlot,Date,qw-method xyPlot,lcens,lcens-method xyPlot,numeric,lcens-method xyPlot,numeric,mcens-method xyPlot,numeric,qw-method xyPlot-censored

Package: smwrQW 0.7.14

smwrQW: Tools for censored data analysis

Comparing Paired Data

Comparing Three or More Groups

Comparing Two Groups

Computing Summary Statistics

Confidence Intervals

Correlation

Multivariate Methods

Plotting Censored Data

Quality Control Data Analysis

Regression

Working with Water-Quality Data

Citation

Development and contributors

Readme and manuals

Help Manual

Usage by other packages (reverse dependencies)